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KMID : 0364820200560040416
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Korean Journal of Microbiology
2020 Volume.56 No. 4 p.416 ~ p.418
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Draft genome sequence of Parasphingopyxis strain GrpM-11 isolated from coastal seawater
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Oh Ji-Sung
Roh Dong-Hyun
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Abstract
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A yellow-pigmented marine bacterium, designated strain GrpM11, was isolated from coastal seawater of East Sea, Korea. Phylogenetically, strain GrpM-11 formed a cluster with the genus Parasphingopyxis, and showed 16S rRNA gene sequence similarities of less than 97% with related type strains. Its draft genome sequence was determined using Illumina HiSeq platform, and obtained a draft genome sequence of a total length of approximately 3.3 Mbp with G + C content of 63.7%. The annotated genome sequence included a total of 3,212 proteincoding genes, 3 rRNA genes, 47 tRNA genes, 4 non-coding RNA genes, and 10 pseudo genes. The draft genome of strain GrpM-11 contained aromatic compound degradation related genes and bacterial secretion system-related genes, which could be useful for biotechnological application, such as bioremediation and a protein secretion host.
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KEYWORD
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Parasphingopyxis, draft genome sequence, Illumina HiSeq
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